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  "Package": "CytobankAPI",
  "Title": "Cytobank API Wrapper for R",
  "Version": "2.2.1",
  "Authors@R": "c(\nperson(\"Stu\", \"Blair\", email=\"sblair@beckman.com\", role=c(\"aut\", \"cre\")),\nperson(\"Qihao\", \"Qi\", email=\"qqi@beckman.com\", role=c(\"aut\")),\nperson(\"Stefanie\", \"Trop\", email=\"strop@beckman.com\", role=\"aut\"),\nperson(\"Louis\", \"Liu\", email=\"ZLIU011@beckman.com\", role=\"aut\"),\nperson(\"Preston\", \"Ng\", role=\"aut\"),\nperson(\"Chris\", \"Ciccolella\", role=\"aut\"),\nperson(\"Katherine\", \"Drake\", role=\"aut\"))",
  "Description": "Tools to interface with Cytobank's API via R, organized by\nendpoints that represent various areas of Cytobank\nfunctionality. Learn more about Cytobank at\n<https://www.beckman.com/flow-cytometry/software>.",
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  "Copyright": "2020 Beckman Coulter, Inc.",
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  "Packaged": {
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  "Author": "Stu Blair [aut, cre], Qihao Qi [aut], Stefanie Trop [aut],\nLouis Liu [aut], Preston Ng [aut], Chris Ciccolella [aut],\nKatherine Drake [aut]",
  "Maintainer": "Stu Blair <sblair@beckman.com>",
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  "Repository": "https://stu-blair.r-universe.dev",
  "Date/Publication": "2023-04-21 07:32:30 UTC",
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  "_created": "2026-10-11T13:05:36.000Z",
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    "attachments.download",
    "attachments.download_zip",
    "attachments.list",
    "attachments.show",
    "attachments.update",
    "attachments.upload",
    "authenticate",
    "authentication.logout",
    "authentication.revoke_all_tokens",
    "authentication.revoke_all_tokens_user",
    "autogating.copy_autogating_analysis_settings",
    "autogating.create_autogating_analysis",
    "autogating.delete_autogating_analysis",
    "autogating.list_autogating_analyses_of_type",
    "autogating.rename_autogating_analysis",
    "autogating.run_autogating_analysis",
    "autogating.show_autogating_analysis_details",
    "autogating.show_autogating_analysis_status",
    "autogating.update_autogating_inference_analysis_details",
    "autogating.update_autogating_training_analysis_details",
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    "citrus.delete",
    "citrus.download",
    "citrus.list",
    "citrus.new",
    "citrus.rename",
    "citrus.run",
    "citrus.show",
    "citrus.status",
    "citrus.update",
    "compensations.list",
    "compensations.show",
    "compensations.upload_csv",
    "CytobankAPI_news",
    "dimensionality_reduction.copy_settings",
    "dimensionality_reduction.delete",
    "dimensionality_reduction.list",
    "dimensionality_reduction.new",
    "dimensionality_reduction.rename",
    "dimensionality_reduction.run",
    "dimensionality_reduction.show",
    "dimensionality_reduction.status",
    "dimensionality_reduction.update",
    "drop.upload",
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    "experiments.clone_selective",
    "experiments.delete",
    "experiments.full_access_users_add",
    "experiments.full_access_users_list",
    "experiments.full_access_users_remove",
    "experiments.list",
    "experiments.new",
    "experiments.show",
    "experiments.trash",
    "experiments.update",
    "fcs_files.download",
    "fcs_files.download_zip",
    "fcs_files.file_internal_comp_show",
    "fcs_files.list",
    "fcs_files.show",
    "fcs_files.status",
    "fcs_files.upload",
    "fcs_files.upload_zip",
    "flowsom.copy_settings",
    "flowsom.delete",
    "flowsom.download",
    "flowsom.list",
    "flowsom.new",
    "flowsom.rename",
    "flowsom.run",
    "flowsom.show",
    "flowsom.status",
    "flowsom.update",
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    "gates.gatingML_download",
    "gates.gatingML_upload",
    "gates.list",
    "gates.show",
    "helper.channel_ids_from_long_names",
    "helper.filter_names_to_ids_from_df",
    "panels.list",
    "panels.show",
    "peacoqc.copy_settings",
    "peacoqc.list",
    "peacoqc.new",
    "peacoqc.rename",
    "peacoqc.run",
    "peacoqc.show",
    "peacoqc.status",
    "peacoqc.update",
    "populations.list",
    "populations.show",
    "sample_tags.download",
    "sample_tags.upload",
    "scales.list",
    "scales.show",
    "scales.update",
    "spade.bubbles_export",
    "spade.bubbles_set",
    "spade.bubbles_show",
    "spade.copy_results",
    "spade.copy_settings",
    "spade.delete",
    "spade.download_all",
    "spade.download_clusters_table",
    "spade.download_global_boundaries_table",
    "spade.download_gml",
    "spade.download_layout_table",
    "spade.download_statistics_tables",
    "spade.list",
    "spade.new",
    "spade.rename",
    "spade.run",
    "spade.show",
    "spade.status",
    "spade.update",
    "statistics.event_counts",
    "statistics.general",
    "users.list",
    "users.show",
    "visne.copy_settings",
    "visne.delete",
    "visne.helper.set_populations",
    "visne.list",
    "visne.new",
    "visne.rename",
    "visne.run",
    "visne.show",
    "visne.status",
    "visne.update"
  ],
  "_help": [
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      "page": "AdvancedAnalysis-class",
      "title": "S4 Advanced Analysis Class",
      "topics": [
        "AdvancedAnalysis-class"
      ]
    },
    {
      "page": "attachments",
      "title": "Attachment Endpoints",
      "topics": [
        "attachments",
        "attachments.delete",
        "attachments.delete,UserSession-method",
        "attachments.download",
        "attachments.download,UserSession-method",
        "attachments.download_zip",
        "attachments.download_zip,UserSession-method",
        "attachments.list",
        "attachments.list,UserSession-method",
        "attachments.show",
        "attachments.show,UserSession-method",
        "attachments.update",
        "attachments.update,UserSession-method",
        "attachments.upload",
        "attachments.upload,UserSession-method"
      ]
    },
    {
      "page": "authentication",
      "title": "Authentication Endpoints",
      "topics": [
        "authenticate",
        "authentication",
        "authentication.logout",
        "authentication.logout,UserSession-method",
        "authentication.revoke_all_tokens",
        "authentication.revoke_all_tokens,UserSession-method",
        "authentication.revoke_all_tokens_user",
        "authentication.revoke_all_tokens_user,UserSession-method"
      ]
    },
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      "page": "autogating",
      "title": "Automatic gating Endpoints",
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        "autogating.copy_autogating_analysis_settings",
        "autogating.copy_autogating_analysis_settings,UserSession-method",
        "autogating.create_autogating_analysis",
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        "autogating.list_autogating_analyses_of_type",
        "autogating.list_autogating_analyses_of_type,UserSession-method",
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        "autogating.run_autogating_analysis,UserSession-method",
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      ]
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        "citrus.copy_settings",
        "citrus.copy_settings,UserSession,CITRUS-method",
        "citrus.delete",
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        "citrus.download",
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        "citrus.new",
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        "citrus.show",
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        "citrus.status",
        "citrus.status,UserSession,CITRUS-method",
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    {
      "page": "CITRUS-class",
      "title": "S4 CITRUS Class",
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        "CITRUS-class"
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    },
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        "compensations.show",
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        "compensations.upload_csv,UserSession-method"
      ]
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        "dimensionality_reduction.copy_settings,UserSession,DimensionalityReduction-method",
        "dimensionality_reduction.delete",
        "dimensionality_reduction.delete,UserSession,DimensionalityReduction-method",
        "dimensionality_reduction.list",
        "dimensionality_reduction.list,UserSession-method",
        "dimensionality_reduction.new",
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        "dimensionality_reduction.rename",
        "dimensionality_reduction.rename,UserSession,DimensionalityReduction-method",
        "dimensionality_reduction.run",
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        "dimensionality_reduction.show",
        "dimensionality_reduction.show,UserSession-method",
        "dimensionality_reduction.status",
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        "dimensionality_reduction.update,UserSession,DimensionalityReduction-method"
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    },
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      "page": "DimensionalityReduction-class",
      "title": "S4 DimensionalityReduction Class",
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        "DimensionalityReduction-class"
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        "drop",
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        "drop.upload,UserSession-method"
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    },
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      "page": "experiments",
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        "experiments.clone_full",
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        "experiments.clone_selective",
        "experiments.clone_selective,UserSession-method",
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        "experiments.full_access_users_list",
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        "experiments.update",
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      "page": "fcs_files",
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        "fcs_files.download,UserSession-method",
        "fcs_files.download_zip",
        "fcs_files.download_zip,UserSession-method",
        "fcs_files.file_internal_comp_show",
        "fcs_files.file_internal_comp_show,UserSession-method",
        "fcs_files.list",
        "fcs_files.list,UserSession-method",
        "fcs_files.show",
        "fcs_files.show,UserSession-method",
        "fcs_files.status",
        "fcs_files.status,UserSession-method",
        "fcs_files.upload",
        "fcs_files.upload,UserSession-method",
        "fcs_files.upload_zip",
        "fcs_files.upload_zip,UserSession-method"
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    },
    {
      "page": "flowsom",
      "title": "FlowSOM Endpoints",
      "topics": [
        "flowsom",
        "flowsom.copy_settings",
        "flowsom.copy_settings,UserSession,FlowSOM-method",
        "flowsom.delete",
        "flowsom.delete,UserSession,FlowSOM-method",
        "flowsom.download",
        "flowsom.download,UserSession,FlowSOM-method",
        "flowsom.list",
        "flowsom.list,UserSession-method",
        "flowsom.new",
        "flowsom.new,UserSession-method",
        "flowsom.rename",
        "flowsom.rename,UserSession,FlowSOM-method",
        "flowsom.run",
        "flowsom.run,UserSession,FlowSOM-method",
        "flowsom.show",
        "flowsom.show,UserSession-method",
        "flowsom.status",
        "flowsom.status,UserSession,FlowSOM-method",
        "flowsom.update",
        "flowsom.update,UserSession,FlowSOM-method"
      ]
    },
    {
      "page": "FlowSOM-class",
      "title": "S4 FlowSOM Class",
      "topics": [
        "FlowSOM-class"
      ]
    },
    {
      "page": "gates",
      "title": "Gate Endpoints",
      "topics": [
        "gates",
        "gates.apply",
        "gates.apply,UserSession-method",
        "gates.gatingML_download",
        "gates.gatingML_download,UserSession-method",
        "gates.gatingML_upload",
        "gates.gatingML_upload,UserSession-method",
        "gates.list",
        "gates.list,UserSession-method",
        "gates.show",
        "gates.show,UserSession-method"
      ]
    },
    {
      "page": "helper_functions",
      "title": "Helper Functions",
      "topics": [
        "helper.channel_ids_from_long_names",
        "helper.filter_names_to_ids_from_df",
        "helper_functions"
      ]
    },
    {
      "page": "news",
      "title": "News",
      "topics": [
        "CytobankAPI_news",
        "news"
      ]
    },
    {
      "page": "optSNE-class",
      "title": "S4 opt-SNE Class",
      "topics": [
        "optSNE-class"
      ]
    },
    {
      "page": "panels",
      "title": "Panel Endpoints",
      "topics": [
        "panels",
        "panels.list",
        "panels.list,UserSession-method",
        "panels.show",
        "panels.show,UserSession-method"
      ]
    },
    {
      "page": "peacoqc",
      "title": "PeacoQC Endpoints",
      "topics": [
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        "peacoqc.copy_settings",
        "peacoqc.copy_settings,UserSession,PeacoQC-method",
        "peacoqc.list",
        "peacoqc.list,UserSession-method",
        "peacoqc.new",
        "peacoqc.new,UserSession-method",
        "peacoqc.rename",
        "peacoqc.rename,UserSession,PeacoQC-method",
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